SELECT 
  * 
FROM 
  cscart_logos 
WHERE 
  layout_id IN (41, 0) 
  AND style_id IN ('Dark_Blue', '') 
  AND storefront_id IN (4, 0) 
  AND company_id = 5

Query time 0.00016

JSON explain

{
  "query_block": {
    "select_id": 1,
    "table": {
      "table_name": "cscart_logos",
      "access_type": "ALL",
      "rows": 134,
      "filtered": 100,
      "attached_condition": "cscart_logos.company_id = 5 and cscart_logos.layout_id in (41,0) and cscart_logos.style_id in ('Dark_Blue','') and cscart_logos.storefront_id in (4,0)"
    }
  }
}

Result

logo_id layout_id style_id company_id type storefront_id
183 0 5 mail 0
182 0 5 theme 0